Collaborator Project Page

= Projects =

PDEF v Fli1 (Watson/Connor)

 * 1) What are the genes that are changing in PDEF v GFP in comparison to Fli1 v GFP? Intersection? Non-overlapping? How do we visualize this? Venn Diagrams? Heat Maps? etc
 * 2) What pathways are involved with these genes?

Karenia Brevis (Kelly Fridey)
Currently have three libraries to use for Trinity assembly to create reference transcript The Hudson Alpha library was amplified with custom primers to include Spliced Leader sequence on 5' primer, so I created a fasta file to use in trimmomatic to remove adapters.
 * 1) 2 libraries sequenced at Moore Foundation on HiSeq from total RNA. One from log phase, one from stationary phase. Paired end, 50bp, we don't have a lot of other information from them in regards to if any trimming was done or not.
 * 2) Library sequenced at Hudson Alpha on HiSeq2000, 1/2 lane, paired end, 100 bp