Publications

Out of date...

Selection of recent conference posters and abstracts
Pharr, E. and Anderson, P.E. (2012). gLIMS: Google Cloud-based Laboratory Information Management System for NMR Metabolomics. Paper and poster: 3rd Annual ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB).

Anderson, P. and Peterson, M. (2012). Empirical Metabolite Identification via GA Feature Selection and Bayes Classification. Paper and Poster: 3rd Annual ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB).

Morgan, J. C., Chapman, R. W., and Anderson, P.E. (2012). A Next Generation Sequence Processing and Analysis Platform with Integrated Cloud-storage and High Performance Computing Resources. Poster and abstract: 3rd Annual ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB).

Hack, C. E., Fleming, E. J., Anderson, P. E., Meghan K. Makley, Peter J. Robinson, Mark W. Lisanby, and Gearhart, J. M. (2011). Mechanistically-based Computational Approaches to Predicting Host Immune Response to Biological Warfare Agents. Presentation and abstract: Aerobiology in Biodefense IV. Richmond VA.

Fleming, E. J., Anderson, P. E., Meghan K. Makley, Peter J. Robinson, Gearhart, J. M., and Hack, C. E. (2011).Mechanistically-based Computational Model of the Host Immune Response to Inhaled Type A and Type B Francisella tularensis Strains. Poster and abstract: Aerobiology in Biodefense IV. Richmond VA.

Hack, C. E., Fleming, E. J., Anderson, P. E., and Gearhart, J. M. (2011). Mechanistically-based computational model of the host immune response to biological warfare agents: Application to tularemia. Poster and abstract: 48th Annual Society of Toxicology. Washington, DC. Hack, C. E., Fleming, E. J., Anderson, P. E., Makley, M. K., Robinson, P. J., and Gearhart, J. M. (2011). Mechanistically-based computational model of the host immune response to biological warfare agents: Application to tularemia. Poster and abstract: ASM Biodefense and Emerging Diseases Research Meeting. Washington, DC.

Fleming, E. J., Makley, M. K., Robinson, P. J., Lisanby, M. W., Anderson, P. E., Gearhart, J. M., and Hack, C. E. (2010). Mechanistically-Based Computational Model of the Host Immune Response to Biological Warfare Agents: Application to Tularemia. Presentation and abstract: Chemical and Biological Defense Science and Technology Conference. Orland, FL.

Gunaratna, K., Anderson, P., Ranabahu, A., and Sheth, A (2010). A Study in Hadoop Streaming with Matlab for NMR data processing. Presentation, abstract, and paper: 2nd Annual IEEE International Conference on Cloud Computing (Cloudcom), Indianapolis, IN.

Manjunatha, A., Ranabahu, A., Anderson, P. and Sheth, A. (2010). A study of generating customized data intensive scientific workflows with domain specific language. Poster, abstract, and paper: 2nd Annual IEEE International Conference on Cloud Computing (Cloudcom), Indianapolis, IN.

Anderson, P. E., Sahoo, S. S., Manjunatha, A., Ranabahu, A. H., DelRaso, N. J., Reo, N. V., Sheth, A. P., and Raymer, M. L. (2010). Cloud-based Map-Reduce Architecture for Nuclear Magnetic Resonance based Metabolomics. Presentation, abstract, and paper: 7th Microsoft Research eScience Workshop.

Anderson, P.E., Ruark, C. D., Hack, C. E., Robinson, P. J., and Gearhart, J. M. (2010). A comparison of QSAR Multivariate Statistical Regression Techniques to Predict Chemical Warfare Agent Biologically-Based Dose-Response Model Parameters. Poster and abstract: Chemical and Biological Defense Science and Technology Conference. Orland, FL.

Manjunatha, A., Anderson, P., Sahoo, S., Ranabahu, A., Raymer, M., and Sheth, A. (2010). Cloud Based Scientific Workflow for NMR Data Analysis. Poster and abstract: 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB), Boston, MA.

Manjunatha, A., Anderson, P., Sahoo, S., Ranabahu, A., Raymer, M., and Sheth, A. (2010). Semantically Annotated RESTful Services for Large-scale Metabolomics Data Analysis. Poster and abstract: Ohio Collaborative Conference on Bioinformatics (OCCBIO), Columbus, OH.

Mahle, D. A., Anderson, P. E., Gearhart, J. M., and Reo, N. V. (2010). Effect of Low Level Exposure to Diisopropylfluorophosphate (DFP) on Regional Brain Metabolism in F344 Rats. Poster and abstract: 49th annual Society of Toxicology Conference (SOT), Salt Lake City, Utah.

Anderson, P. E., Maynard, C. M., Hodson, N. R., Kelly, B. J., Reo, N. V., DelRaso, N. J., Doom, T. E., and Raymer, M. L. (2009). A web-based framework for the distribution of bioinformatics techniques: Orthogonal projection on latent structures and principal component analysis implemented as RESTful web services. Poster and abstract: OCCBio Collaborative Conference on Bioinformatics (OCCBIO), Cleveland, OH.

Anderson, P. E., Reo, N. V., DelRaso, N. J., Doom, T. E., and Raymer, M. L. (2008). Gaussian binning: A new kernel-based method for processing NMR spectroscopic data for metabolomics. Presentation and abstract: 11th annual Force Health Protection Conference (FHP), Albuquerque, New Mexico.

Selection of recent peer reviewed technical articles
Pharr, E. and Anderson, P.E. (2012). gLIMS: Google Cloud-based Laboratory Information Management System for NMR Metabolomics. Accepted for publication in the proceedings of the 3rd Annual ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB).

Anderson, P. and Peterson, M. (2012). Empirical Metabolite Identification via GA Feature Selection and Bayes Classification. Accepted for publication in the proceedings of the 3rd Annual ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB).

Ruark, C., Hack, H., Robinson, P., Anderson, P., and Gearhart, J. (2012) Quantitative Structure-Activity Relationships for Organophosphates Binding to Acetylcholinesterase. Accepted for publication to Archives of Toxicology.

Ajith Ranabahu, Paul Anderson, and Amit Sheth. (2011). The Cloud Agnostic e-Science Analysis Platform, IEEE Internet Computing, vol. 15, no. 6, pp. 85-89, Nov./Dec. 2011, doi:10.1109/MIC.2011.159

Manjunatha, A., Anderson, P., Ranabahu, A., and Sheth, A. (2011). Identifying and Implementing the Underlying Operators for Nuclear Magnetic Resonance based Metabolomics Data Analysis. In Proceedings of 3rd International Conference on Bioinformatics and Computational Biology (BICoB), New Orleans, LA.

Gunaratna, K., Anderson, P., Ranabahu, A., and Sheth, A (2010). A Study in Hadoop Streaming with Matlab for NMR data processing. In Proceedings of 2nd IEEE International Conference on Cloud Computing (Cloudcom), Indianapolis, IN.

Mahle, D. A., Anderson, P. E., DelRaso, N. J., Raymer, M. L., Neuforth, A. E., and Reo, N. V. (2010). A Generalized Model for Metabolomic Analyses: Application to Dose and Time Dependent Toxicity. Metabolomics, 7(2), 206-216.

Anderson, P. E., Sahoo, S. S., Manjunatha, A., Ranabahu, A. H., DelRaso, N. J., Reo, N. V., Sheth, A. P., and Raymer, M. L. (2010). Cloud-based Map-Reduce Architecture for Nuclear Magnetic Resonance based Metabolomics. Proceedings of the 7th Microsoft Research eScience Workshop.

Anderson, P. E., Mahle, D. A., Raymer, M. L., Reo, N. V., DelRaso, N. J., and Doom, T. E. (2010). Dynamic Adaptive Binning: Dynamic quantification of nuclear magnetic resonance spectroscopic data.Metabolomics, 7(2), 179-190.

Anderson P. E., M. L. Raymer, Kelly, B. J., Reo, N. V., DelRaso, N. J., and Doom, T. E. (2009), Characterization of 1H NMR spectroscopic data and the generation of synthetic validation sets, Bioinformatics, 25, 2992 – 3000.

Anderson, P.E., Reo, N. V., DelRaso, N. J., Doom, T. E., and Raymer, M. L. (2008) Gaussian binning: A new kernel-based method for processing NMR spectroscopic data for metabolomics, Metabolomics, 4:3, 261 – 272.

Kelly, B. J., Anderson, P. E., Reo, N. V., DelRaso, N. J., Doom, T. E., and Raymer, M. L. (2007). A proposed statistical protocol for the analysis of metabolomic toxicological data derived from NMR spectroscopy. In Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering (BIBE 2007), volume II, pages 1414 – 1418, Boston, Massachusetts. (acceptance rate <12%)

Anderson, P. E., Raiford, D. W., Sweeney, D. J., Doom, T. E., and Raymer, M. L. (2005). Stochastic model of protease-ligand reactions. In Proceedings of the 5th IEEE Symposium on Bioinformatics and Bioengineering (BIBE 2005), pages 306–310, Minneapolis, Minnesota. (acceptance rate 29%)